New Version on Cran

Posted on February 6, 2019 by fischuu

Today we submitted the next stable version (0.9.4) to Cran, it contains a few minor bugfixes.

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Added importFQ() function

Posted on July 4, 2018 by fischuu

Today I added the importFQ() function to hoardeR to import fastq files to it. It has also a print and a summary function.

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getSequenceFromNCBI() function added

Posted on May 7, 2018 by fischuu

Sometimes it is rather difficult to download sequences from the NCBI page, given a certain ID. For that I added the function getSequenceFromNCBI to hoardeR. The usage is

getSequenceFromNCBI(id, file)

where id refers to a id of an organism in the nuccore database. If a filename is provided,  the function automatically stores the results into it. If id is a vector, the sequences for all id are downloaded.

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Added importBed() function

Posted on September 2, 2016 by fischuu

I added today the convenience wrapper ‘importBed()’ to the package to import bed-files to R.

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Version 0.9 released

Posted on September 2, 2016 by fischuu

The latest hoardeR version 0.9 is now available on Cran:

https://cran.r-project.org/package=hoardeR

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Added exportBed()

Posted on August 30, 2016 by fischuu

I added today the `exportBed()` function as an convenience wrapper around `write.table()`.

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Function importPedMap() is deprecated

Posted on August 30, 2016 by fischuu

The function importPedMap() was flagged as deprecated in version 0.9. Please start using the function with the same name from the GenomicTools package.

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Added a VignetteBuilder

Posted on August 30, 2016 by fischuu

The vignette is written in Markdown, so Cran hasn’t created a link to the Vignette. This could be solved by added a VignetteBuilder to the DESCRIPTION file.

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New function added

Posted on August 23, 2016 by fischuu

Today I added a new function called exportFA(). It takes an FA-object from hoardeR and stores it as a regular fasta file.

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Major hoardeR update

Posted on August 23, 2016 by fischuu

Currently we are working on a major update for hoardeR so that it will be more user-friendly and easier to use. Further, we also set up this page to provide additional information and help.

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