Author Archives: fischuu

New Version on Cran

Today we submitted the next stable version (0.9.4) to Cran, it contains a few minor bugfixes.

Posted in Release | Leave a comment

Added importFQ() function

Today I added the importFQ() function to hoardeR to import fastq files to it. It has also a print and a summary function.

Posted in Update | Leave a comment

getSequenceFromNCBI() function added

Sometimes it is rather difficult to download sequences from the NCBI page, given a certain ID. For that I added the function getSequenceFromNCBI to hoardeR. The usage is getSequenceFromNCBI(id, file) where id refers to a id of an organism in … Continue reading

Posted in Release | Leave a comment

Added importBed() function

I added today the convenience wrapper ‘importBed()’ to the package to import bed-files to R.

Posted in Update | Leave a comment

Version 0.9 released

The latest hoardeR version 0.9 is now available on Cran: https://cran.r-project.org/package=hoardeR

Posted in Release | Leave a comment

Added exportBed()

I added today the `exportBed()` function as an convenience wrapper around `write.table()`.

Posted in Update | Leave a comment

Function importPedMap() is deprecated

The function importPedMap() was flagged as deprecated in version 0.9. Please start using the function with the same name from the GenomicTools package.

Posted in Update | Leave a comment

Added a VignetteBuilder

The vignette is written in Markdown, so Cran hasn’t created a link to the Vignette. This could be solved by added a VignetteBuilder to the DESCRIPTION file.

Posted in Update | Leave a comment

New function added

Today I added a new function called exportFA(). It takes an FA-object from hoardeR and stores it as a regular fasta file.

Posted in Update | Leave a comment

Major hoardeR update

Currently we are working on a major update for hoardeR so that it will be more user-friendly and easier to use. Further, we also set up this page to provide additional information and help.

Posted in Update | Leave a comment