Author Archives: fischuu
Today we submitted the next stable version (0.9.4) to Cran, it contains a few minor bugfixes.
Today I added the importFQ() function to hoardeR to import fastq files to it. It has also a print and a summary function.
Sometimes it is rather difficult to download sequences from the NCBI page, given a certain ID. For that I added the function getSequenceFromNCBI to hoardeR. The usage is getSequenceFromNCBI(id, file) where id refers to a id of an organism in … Continue reading
I added today the convenience wrapper ‘importBed()’ to the package to import bed-files to R.
The latest hoardeR version 0.9 is now available on Cran: https://cran.r-project.org/package=hoardeR
I added today the `exportBed()` function as an convenience wrapper around `write.table()`.
The function importPedMap() was flagged as deprecated in version 0.9. Please start using the function with the same name from the GenomicTools package.
The vignette is written in Markdown, so Cran hasn’t created a link to the Vignette. This could be solved by added a VignetteBuilder to the DESCRIPTION file.
Today I added a new function called exportFA(). It takes an FA-object from hoardeR and stores it as a regular fasta file.
Currently we are working on a major update for hoardeR so that it will be more user-friendly and easier to use. Further, we also set up this page to provide additional information and help.